Index

A

AbstractWaitDialog (class in pydetecdiv.app) accept() (pydetecdiv.app.gui.ActionsData.AddPathDialog method) (pydetecdiv.app.gui.ActionsData.ComputeDriftDialog method) (pydetecdiv.app.gui.ActionsData.ImportDataDialog method) (pydetecdiv.app.gui.ActionsData.ImportMetaDataDialog method) (pydetecdiv.app.gui.ActionsProject.ProjectDialog method) (pydetecdiv.app.gui.Windows.ImageResourceChooser method) active_subwindow (pydetecdiv.app.gui.Windows.MainWindow property) add() (pydetecdiv.domain.Image.Image static method) add_class() (pydetecdiv.plugins.roi_classification.gui.classification.ClassListView method) add_context_action() (pydetecdiv.plugins.roi_classification.Plugin method) add_dir() (pydetecdiv.app.gui.ActionsData.ImportDataDialog method) (pydetecdiv.app.gui.ActionsData.ImportMetaDataDialog method) add_files() (pydetecdiv.app.gui.ActionsData.ImportDataDialog method) (pydetecdiv.app.gui.ActionsData.ImportMetaDataDialog method) add_item() (pydetecdiv.plugins.parameters.ChoiceParameter method) add_items() (pydetecdiv.plugins.parameters.ChoiceParameter method) add_path() (pydetecdiv.app.gui.ActionsData.ImportDataDialog method) (pydetecdiv.app.gui.ActionsData.ImportMetaDataDialog method) add_point() (pydetecdiv.app.gui.core.widgets.viewers.Scene method) add_tabbed_window() (pydetecdiv.app.gui.Windows.MainWindow method) addActions() (pydetecdiv.plugins.Plugin method) (pydetecdiv.plugins.roi_classification.Plugin method) addButton() (pydetecdiv.plugins.gui.Dialog method) addButtonBox() (pydetecdiv.plugins.gui.Dialog method) addGroupBox() (pydetecdiv.plugins.gui.Dialog method) addItem() (pydetecdiv.app.gui.core.widgets.viewers.Layer method) (pydetecdiv.plugins.gui.ListWidget method) addItemDict() (pydetecdiv.plugins.gui.ComboBox method) (pydetecdiv.plugins.gui.ListView method) (pydetecdiv.plugins.gui.ListWidget method)

addLayer() (pydetecdiv.app.gui.core.widgets.viewers.GraphicsView method) addOption() (pydetecdiv.plugins.gui.GroupBox method) (pydetecdiv.plugins.gui.ParametersFormGroupBox method) AddPathDialog (class in pydetecdiv.app.gui.ActionsData) addSubBox() (pydetecdiv.plugins.gui.GroupBox method) (pydetecdiv.plugins.gui.ParametersFormGroupBox method) addText() (pydetecdiv.app.StdoutWaitDialog method) adjust_contrast() (pydetecdiv.domain.Image.Image method) AdvancedButton (class in pydetecdiv.plugins.gui) AnalysisToolsTree (class in pydetecdiv.app.gui.Windows) annotate() (pydetecdiv.domain.Project.Project method) annotate_current() (pydetecdiv.plugins.roi_classification.gui.classification.ManualAnnotator method) annotate_data() (pydetecdiv.persistence.sqlalchemy.repositories.ShallowSQLite3 method) annotation_run_list (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationTool property) (pydetecdiv.plugins.roi_classification.gui.classification.ManualAnnotator property) (pydetecdiv.plugins.roi_classification.gui.classification.PredictionViewer property) annotation_tool (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationScene property) AnnotationChartView (class in pydetecdiv.plugins.roi_classification.gui.classification) AnnotationMenuBar (class in pydetecdiv.plugins.roi_classification.gui.classification) AnnotationScene (class in pydetecdiv.plugins.roi_classification.gui.classification) AnnotationTool (class in pydetecdiv.plugins.roi_classification.gui.classification) apply() (pydetecdiv.app.gui.ActionsSettings.SettingsDialog method) ApplyDrift (class in pydetecdiv.app.gui.ActionsData) arrangeWidgets() (pydetecdiv.plugins.gui.Dialog method) as_array() (pydetecdiv.domain.Image.Image method) as_tensor() (pydetecdiv.domain.Image.Image method) as_torch() (pydetecdiv.domain.Image.Image method) association() (pydetecdiv.persistence.sqlalchemy.orm.associations.Linker static method) author (pydetecdiv.domain.Project.Project property) auto_channels() (pydetecdiv.domain.Image.Image static method) auto_contrast() (pydetecdiv.domain.Image.Image method)

B

BackgroundLayer (class in pydetecdiv.app.gui.core.widgets.viewers) bin_mask (pydetecdiv.domain.Mask.Mask property) bitmap2contour() (pydetecdiv.domain.Mask.Mask static method) bottom_right (pydetecdiv.domain.dso.BoxedDSO property) (pydetecdiv.domain.FOV.FOV property) (pydetecdiv.domain.ROI.ROI property) (pydetecdiv.utils.Shapes.Box property) bounding_box() (pydetecdiv.domain.Entity.Entity method)

bounding_boxes() (pydetecdiv.domain.Entity.Entity method) BoundingBox (class in pydetecdiv.domain.BoundingBox) boundingRect() (pydetecdiv.app.gui.core.widgets.viewers.Layer method) Box (class in pydetecdiv.utils.Shapes) box (pydetecdiv.domain.dso.BoxedDSO property) BoxedDSO (class in pydetecdiv.domain.dso) build_dso() (pydetecdiv.domain.Project.Project method) button_clicked() (pydetecdiv.app.gui.RawData2FOV.RawData2FOV method) (pydetecdiv.plugins.roi_classification.gui.ImportAnnotatedROIs.FOV2ROIlinks method)

C

cancel() (pydetecdiv.app.AbstractWaitDialog method) (pydetecdiv.app.StdoutWaitDialog method) (pydetecdiv.app.WaitDialog method) (pydetecdiv.domain.Project.Project method) cancel_import() (pydetecdiv.app.gui.ActionsData.ImportDataDialog method) cdim (pydetecdiv.domain.ImageResource.ImageResource property) change_box() (pydetecdiv.domain.BoundingBox.BoundingBox method) change_frame() (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationTool method) change_mask() (pydetecdiv.domain.Mask.Mask method) change_point() (pydetecdiv.domain.Point.Point method) change_sample_style() (pydetecdiv.app.gui.RawData2FOV.RawData2FOV method) (pydetecdiv.plugins.roi_classification.gui.ImportAnnotatedROIs.FOV2ROIlinks method) changed (pydetecdiv.plugins.gui.ComboBox property) (pydetecdiv.plugins.gui.DoubleSpinBox property) (pydetecdiv.plugins.gui.LineEdit property) (pydetecdiv.plugins.gui.ListView property) (pydetecdiv.plugins.gui.RadioButton property) (pydetecdiv.plugins.gui.SpinBox property) channel_histogram() (pydetecdiv.domain.Image.Image method) check_validity() (pydetecdiv.domain.dso.DomainSpecificObject method) CheckParameter (class in pydetecdiv.plugins.parameters) ChoiceParameter (class in pydetecdiv.plugins.parameters) choose_colour() (pydetecdiv.app.gui.RawData2FOV.RawData2FOV method) (pydetecdiv.plugins.roi_classification.gui.ImportAnnotatedROIs.FOV2ROIlinks method) class_names (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationChartView property) (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationTool property) class_names() (pydetecdiv.plugins.roi_classification.Plugin method) ClassListView (class in pydetecdiv.plugins.roi_classification.gui.classification) clear() (pydetecdiv.plugins.parameters.Parameter method) clear_colours() (pydetecdiv.app.gui.RawData2FOV.RawData2FOV method) (pydetecdiv.plugins.roi_classification.gui.ImportAnnotatedROIs.FOV2ROIlinks method) clear_list() (pydetecdiv.app.gui.ActionsData.FileListView method) (pydetecdiv.plugins.gui.ListView method) clicked() (pydetecdiv.app.gui.ActionsSettings.SettingsDialog method) (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationChartView method) close() (pydetecdiv.domain.SingleFileImageResource.SingleFileImageResource method) (pydetecdiv.persistence.repository.ShallowDb method) (pydetecdiv.persistence.sqlalchemy.repositories.ShallowSQLite3 method) (pydetecdiv.plugins.roi_classification.DataProvider method) close_tab() (pydetecdiv.app.gui.core.widgets.TabWidgets.TabbedWindow method) close_window() (pydetecdiv.app.AbstractWaitDialog method) (pydetecdiv.app.StdoutWaitDialog method) closeEvent() (pydetecdiv.app.AbstractWaitDialog method) (pydetecdiv.app.gui.core.widgets.TabWidgets.TabbedWindow method) (pydetecdiv.app.gui.Windows.MainWindow method)

colourize_labels() (pydetecdiv.app.gui.RawData2FOV.RawData2FOV method) (pydetecdiv.plugins.roi_classification.gui.ImportAnnotatedROIs.FOV2ROIlinks method) colourize_matches() (pydetecdiv.app.gui.RawData2FOV.RawData2FOV method) (pydetecdiv.plugins.roi_classification.gui.ImportAnnotatedROIs.FOV2ROIlinks method) ComboBox (class in pydetecdiv.plugins.gui) comments (pydetecdiv.domain.FOV.FOV property) commit() (pydetecdiv.domain.Project.Project method) (pydetecdiv.persistence.repository.ShallowDb method) (pydetecdiv.persistence.sqlalchemy.repositories.ShallowSQLite3 method) compose_channels() (pydetecdiv.domain.Image.Image static method) compute_class_weights() (pydetecdiv.plugins.roi_classification.Plugin method) compute_drift() (pydetecdiv.app.gui.ActionsData.ComputeDriftDialog method) (pydetecdiv.domain.ImageResourceData.ImageResourceData method) compute_drift_phase_correlation_cv2() (pydetecdiv.domain.ImageResourceData.ImageResourceData method) compute_drift_vidstab() (pydetecdiv.domain.ImageResourceData.ImageResourceData method) ComputeDrift (class in pydetecdiv.app.gui.ActionsData) ComputeDriftDialog (class in pydetecdiv.app.gui.ActionsData) connect_to() (pydetecdiv.plugins.gui.DialogButtonBox method) contextMenuEvent() (pydetecdiv.app.gui.ActionsData.FileListView method) (pydetecdiv.plugins.gui.ListView method) (pydetecdiv.plugins.roi_classification.gui.classification.ClassListView method) contour (pydetecdiv.domain.Mask.Mask property) coords (pydetecdiv.domain.BoundingBox.BoundingBox property) (pydetecdiv.domain.Point.Point property) copy_files() (in module pydetecdiv) count_imported_files() (pydetecdiv.app.gui.ActionsData.ImportDataDialog method) count_links() (pydetecdiv.domain.Project.Project method) count_objects() (pydetecdiv.domain.Project.Project method) count_records() (pydetecdiv.persistence.repository.ShallowDb method) (pydetecdiv.persistence.sqlalchemy.repositories.ShallowSQLite3 method) create() (pydetecdiv.persistence.repository.ShallowDb method) (pydetecdiv.persistence.sqlalchemy.repositories.ShallowSQLite3 method) create_annotated_rois() (pydetecdiv.plugins.roi_classification.gui.ImportAnnotatedROIs.FOV2ROIlinks method) create_app() (in module pydetecdiv.app) create_fov_annotate() (pydetecdiv.app.gui.RawData2FOV.RawData2FOV method) create_fov_from_raw_data() (pydetecdiv.domain.Project.Project method) create_hdf5_annotated_rois() (pydetecdiv.plugins.roi_classification.Plugin method) create_project() (pydetecdiv.app.gui.ActionsProject.NewProject static method) create_table() (pydetecdiv.plugins.roi_classification.Plugin method) CreateFOV (class in pydetecdiv.app.gui.ActionsData) crop() (pydetecdiv.domain.Image.Image method) current_tool() (pydetecdiv.app.gui.Windows.DrawingToolsPalette method) Cursor (class in pydetecdiv.app.gui.Windows)

D

DAO (class in pydetecdiv.persistence.sqlalchemy.orm.main) Data (class in pydetecdiv.domain.Data) data (pydetecdiv.domain.FOV.FOV property) data() (pydetecdiv.persistence.sqlalchemy.orm.ROIdao.ROIdao method) data_list (pydetecdiv.domain.Dataset.Dataset property) (pydetecdiv.domain.ImageResource.ImageResource property) data_list() (pydetecdiv.persistence.sqlalchemy.orm.DatasetDao.DatasetDao method) (pydetecdiv.persistence.sqlalchemy.orm.ImageResourceDao.ImageResourceDao method) data_sample() (pydetecdiv.domain.SingleFileImageResource.SingleFileImageResource method) data_to_roi() (pydetecdiv.persistence.sqlalchemy.orm.associations.ROIdata static method) DataDao (class in pydetecdiv.persistence.sqlalchemy.orm.DataDao) DataMenu (class in pydetecdiv.app.gui) DataProvider (class in pydetecdiv.plugins.roi_classification) Dataset (class in pydetecdiv.domain.Dataset) dataset (pydetecdiv.domain.Data.Data property) (pydetecdiv.domain.ImageResource.ImageResource property) DatasetDao (class in pydetecdiv.persistence.sqlalchemy.orm.DatasetDao) date (pydetecdiv.domain.Project.Project property) decompose_channels() (pydetecdiv.domain.Image.Image method) default (pydetecdiv.plugins.parameters.Parameter property) define_classes() (pydetecdiv.plugins.roi_classification.gui.classification.ManualAnnotator method) DefineClassesDialog (class in pydetecdiv.plugins.roi_classification.gui.classification) delete() (pydetecdiv.domain.dso.DomainSpecificObject method) (pydetecdiv.domain.FOV.FOV method) (pydetecdiv.domain.Project.Project method) (pydetecdiv.domain.ROI.ROI method) delete_files() (in module pydetecdiv)

delete_item() (pydetecdiv.app.gui.core.widgets.viewers.Scene method) delete_object() (pydetecdiv.persistence.repository.ShallowDb method) (pydetecdiv.persistence.sqlalchemy.repositories.ShallowSQLite3 method) delete_project() (in module pydetecdiv.persistence.project) (pydetecdiv.app.gui.ActionsProject.ProjectDialog method) DeleteProject (class in pydetecdiv.app.gui.ActionsProject) Dialog (class in pydetecdiv.plugins.gui) DialogButtonBox (class in pydetecdiv.plugins.gui) Dimension (class in pydetecdiv.utils.ImageResource) dims (pydetecdiv.domain.ImageResource.ImageResource property) (pydetecdiv.domain.ImageResourceData.ImageResourceData property) (pydetecdiv.domain.MultiFileImageResource.MultiFileImageResource property) (pydetecdiv.domain.SingleFileImageResource.SingleFileImageResource property) display_class_name() (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationTool method) display_Item_size() (pydetecdiv.app.gui.core.widgets.viewers.Scene method) display_roi() (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationTool method) DomainSpecificObject (class in pydetecdiv.domain.dso) DoubleSpinBox (class in pydetecdiv.plugins.gui) draw_annotated_rois() (pydetecdiv.plugins.roi_classification.Plugin method) draw_Item() (pydetecdiv.app.gui.core.widgets.viewers.Scene method) DrawingTools (class in pydetecdiv.app) DrawingToolsPalette (class in pydetecdiv.app.gui.Windows) DrawPoint (class in pydetecdiv.app.gui.Windows) DrawRect (class in pydetecdiv.app.gui.Windows) dtype (pydetecdiv.domain.Image.Image property) duplicate_selected_Item() (pydetecdiv.app.gui.core.widgets.viewers.Scene method) DuplicateItem (class in pydetecdiv.app.gui.Windows)

E

edited (pydetecdiv.plugins.gui.LineEdit property) ellipse_contour (pydetecdiv.domain.Mask.Mask property) ellipse_item (pydetecdiv.domain.Mask.Mask property) enable() (pydetecdiv.app.gui.ActionsData.ApplyDrift method) (pydetecdiv.app.gui.ActionsData.ComputeDrift method) (pydetecdiv.app.gui.ActionsData.CreateFOV method) entities() (pydetecdiv.persistence.sqlalchemy.orm.ROIdao.ROIdao method) Entity (class in pydetecdiv.domain.Entity) entity (pydetecdiv.domain.BoundingBox.BoundingBox property) (pydetecdiv.domain.Mask.Mask property) (pydetecdiv.domain.Point.Point property)

equalize_hist() (pydetecdiv.domain.Image.Image method) execute() (pydetecdiv.domain.Run.Run method) executescript() (pydetecdiv.persistence.sqlalchemy.repositories.ShallowSQLite3 method) exit_frame (pydetecdiv.domain.Entity.Entity property) Experiment (class in pydetecdiv.domain.Experiment) ExperimentDao (class in pydetecdiv.persistence.sqlalchemy.orm.ExperimentDao) export_classification_to_csv() (pydetecdiv.plugins.roi_classification.Plugin method)

F

file_list() (pydetecdiv.app.gui.ActionsData.ImportDataDialog method) FileListView (class in pydetecdiv.app.gui.ActionsData) FileMenu (class in pydetecdiv.app.gui) find_matches() (pydetecdiv.app.gui.RawData2FOV.RawData2FOV static method) (pydetecdiv.plugins.roi_classification.gui.ImportAnnotatedROIs.FOV2ROIlinks method) FineTuningDialog (class in pydetecdiv.plugins.roi_classification.gui.training) fit_to_contents() (pydetecdiv.plugins.gui.Dialog method) FloatParameter (class in pydetecdiv.plugins.parameters)

flush() (pydetecdiv.app.StreamRedirector method) (pydetecdiv.domain.SingleFileImageResource.SingleFileImageResource method) FOV (class in pydetecdiv.domain.FOV) fov (pydetecdiv.domain.Data.Data property) (pydetecdiv.domain.ImageResource.ImageResource property) (pydetecdiv.domain.ROI.ROI property) FOV2ROIlinks (class in pydetecdiv.plugins.roi_classification.gui.ImportAnnotatedROIs) fov_list() (pydetecdiv.persistence.sqlalchemy.orm.DataDao.DataDao method) FOVdao (class in pydetecdiv.persistence.sqlalchemy.orm.FOVdao)

G

generate_uuid() (in module pydetecdiv) get_all_annotations() (pydetecdiv.plugins.roi_classification.Plugin method) get_annotated_rois() (pydetecdiv.plugins.roi_classification.Plugin method) get_annotation() (pydetecdiv.plugins.roi_classification.Plugin method) get_annotation_runs() (pydetecdiv.plugins.roi_classification.Plugin method) get_annotations() (pydetecdiv.plugins.roi_classification.Plugin method) get_appdata_dir() (in module pydetecdiv.settings) get_classification_df() (pydetecdiv.plugins.roi_classification.Plugin method) get_classification_runs() (pydetecdiv.plugins.roi_classification.Plugin method) get_classifications() (pydetecdiv.plugins.roi_classification.Plugin method) get_colliding_ShapeItems() (pydetecdiv.app.gui.core.widgets.viewers.Scene method) get_config() (in module pydetecdiv.settings) get_config_dir() (in module pydetecdiv.settings) get_config_file() (in module pydetecdiv.settings) get_config_files() (in module pydetecdiv.settings) get_config_value() (in module pydetecdiv.settings) get_dataframe() (pydetecdiv.domain.Project.Project method) (pydetecdiv.persistence.repository.ShallowDb method) (pydetecdiv.persistence.sqlalchemy.repositories.ShallowSQLite3 method) get_default_settings() (in module pydetecdiv.settings) get_default_workspace_dir() (in module pydetecdiv.settings) get_destinations() (pydetecdiv.app.gui.ActionsData.ImportDataDialog method) get_drift_corrections() (pydetecdiv.plugins.roi_classification.Plugin method) get_fov_data() (pydetecdiv.plugins.roi_classification.Plugin method) get_groups() (pydetecdiv.plugins.parameters.Parameters method) get_linked_objects() (pydetecdiv.domain.Project.Project method) get_linked_records() (pydetecdiv.persistence.repository.ShallowDb method) (pydetecdiv.persistence.sqlalchemy.repositories.ShallowSQLite3 method)

get_lr_metric() (in module pydetecdiv.plugins.roi_classification) get_match_span() (pydetecdiv.app.gui.RawData2FOV.RawData2FOV static method) (pydetecdiv.plugins.roi_classification.gui.ImportAnnotatedROIs.FOV2ROIlinks static method) get_match_spans() (pydetecdiv.app.gui.RawData2FOV.RawData2FOV static method) (pydetecdiv.plugins.roi_classification.gui.ImportAnnotatedROIs.FOV2ROIlinks static method) get_named_object() (pydetecdiv.domain.Project.Project method) get_object() (pydetecdiv.domain.Project.Project method) get_objects() (pydetecdiv.domain.Project.Project method) get_plugins_dir() (in module pydetecdiv.settings) get_prediction_runs() (pydetecdiv.plugins.roi_classification.Plugin method) get_project_dir() (in module pydetecdiv.app) get_project_name() (pydetecdiv.app.gui.ActionsProject.ProjectDialog method) get_record() (pydetecdiv.persistence.repository.ShallowDb method) (pydetecdiv.persistence.sqlalchemy.repositories.ShallowSQLite3 method) get_record_by_name() (pydetecdiv.persistence.sqlalchemy.repositories.ShallowSQLite3 method) get_records() (pydetecdiv.domain.Project.Project method) (pydetecdiv.persistence.repository.ShallowDb method) (pydetecdiv.persistence.sqlalchemy.orm.main.DAO method) (pydetecdiv.persistence.sqlalchemy.repositories.ShallowSQLite3 method) get_regex() (pydetecdiv.app.gui.RawData2FOV.RawData2FOV method) (pydetecdiv.plugins.roi_classification.gui.ImportAnnotatedROIs.FOV2ROIlinks method) get_roi_annotations() (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationTool method) get_roi_list() (pydetecdiv.plugins.roi_classification.Plugin method) get_selected_Item() (pydetecdiv.app.gui.core.widgets.viewers.Scene method) get_settings() (in module pydetecdiv.app) get_unannotated_rois() (pydetecdiv.plugins.roi_classification.Plugin method) graphics_item (pydetecdiv.domain.Mask.Mask property) GraphicsView (class in pydetecdiv.app.gui.core.widgets.viewers) GroupBox (class in pydetecdiv.plugins.gui)

H

has_links() (pydetecdiv.domain.Project.Project method) height (pydetecdiv.domain.BoundingBox.BoundingBox property) (pydetecdiv.utils.Shapes.Box property)

Help (class in pydetecdiv.app.gui) hide() (pydetecdiv.plugins.gui.AdvancedButton method) histogram() (pydetecdiv.domain.Image.Image method)

I

id_mapping() (pydetecdiv.domain.Project.Project method) Image (class in pydetecdiv.domain.Image) (class in pydetecdiv.utils.ImageResource) image_files (pydetecdiv.domain.ImageResource.ImageResource property) image_files_5d (pydetecdiv.domain.ImageResource.ImageResource property) image_resource (pydetecdiv.domain.Data.Data property) image_resource() (pydetecdiv.domain.FOV.FOV method) image_resource_data() (pydetecdiv.domain.ImageResource.ImageResource method) image_resources() (pydetecdiv.persistence.sqlalchemy.orm.FOVdao.FOVdao method) ImageResource (class in pydetecdiv.domain.ImageResource) ImageResourceChooser (class in pydetecdiv.app.gui.Windows) ImageResourceDao (class in pydetecdiv.persistence.sqlalchemy.orm.ImageResourceDao) ImageResourceData (class in pydetecdiv.domain.ImageResourceData) ImgDType (class in pydetecdiv.domain.Image) import_annotated_rois() (pydetecdiv.plugins.roi_classification.Plugin method) import_classes() (pydetecdiv.plugins.roi_classification.gui.classification.DefineClassesDialog method) import_classifier() (pydetecdiv.plugins.roi_classification.Plugin method) import_data() (pydetecdiv.app.gui.ActionsData.ImportDataDialog method) (pydetecdiv.app.gui.ActionsData.ImportMetaDataDialog method)

import_images() (pydetecdiv.domain.Project.Project method) (pydetecdiv.persistence.repository.ShallowDb method) (pydetecdiv.persistence.sqlalchemy.repositories.ShallowSQLite3 method) import_images_from_metadata() (pydetecdiv.domain.Project.Project method) ImportClassifierDialog (class in pydetecdiv.plugins.roi_classification.gui.training) ImportData (class in pydetecdiv.app.gui.ActionsData) ImportDataDialog (class in pydetecdiv.app.gui.ActionsData) ImportImagesError ImportMetaData (class in pydetecdiv.app.gui.ActionsData) ImportMetaDataDialog (class in pydetecdiv.app.gui.ActionsData) info (pydetecdiv.domain.FOV.FOV property) (pydetecdiv.domain.Project.Project property) initial_roi (pydetecdiv.domain.FOV.FOV property) insert() (pydetecdiv.persistence.sqlalchemy.orm.main.DAO method) IntParameter (class in pydetecdiv.plugins.parameters) item (pydetecdiv.plugins.parameters.ChoiceParameter property) item_dict() (pydetecdiv.app.gui.core.widgets.viewers.Scene method) ItemParameter (class in pydetecdiv.plugins.parameters) items (pydetecdiv.plugins.parameters.ChoiceParameter property)

J

json (pydetecdiv.plugins.parameters.ChoiceParameter property) (pydetecdiv.plugins.parameters.Parameter property)

json() (pydetecdiv.plugins.parameters.Parameters method) JuttingError

K

key (pydetecdiv.plugins.parameters.ChoiceParameter property) keyPressEvent() (pydetecdiv.app.gui.core.widgets.viewers.Scene method) (pydetecdiv.plugins.roi_classification.gui.classification.ManualAnnotator method) (pydetecdiv.plugins.roi_classification.gui.classification.PredictionViewer method)

keys (pydetecdiv.plugins.parameters.ChoiceParameter property) kwargs() (pydetecdiv.plugins.parameters.CheckParameter method) (pydetecdiv.plugins.parameters.NumParameter method) (pydetecdiv.plugins.parameters.Parameter method)

L

Label (class in pydetecdiv.plugins.gui) launch() (pydetecdiv.plugins.Plugin method) Layer (class in pydetecdiv.app.gui.core.widgets.viewers) layers() (pydetecdiv.app.gui.core.widgets.viewers.Scene method) layers2channels() (pydetecdiv.plugins.roi_classification.Plugin method) len (pydetecdiv.plugins.PluginList property) lies_in() (pydetecdiv.utils.Shapes.Box method) LineEdit (class in pydetecdiv.plugins.gui) link() (pydetecdiv.persistence.repository.ShallowDb method) (pydetecdiv.persistence.sqlalchemy.orm.associations.Linker static method) (pydetecdiv.persistence.sqlalchemy.orm.associations.ROIdata static method) (pydetecdiv.persistence.sqlalchemy.repositories.ShallowSQLite3 method) link_objects() (pydetecdiv.domain.Project.Project method)

Linker (class in pydetecdiv.persistence.sqlalchemy.orm.associations) linkGroupBox() (pydetecdiv.plugins.gui.AdvancedButton method) list_projects() (in module pydetecdiv.persistence.project) ListView (class in pydetecdiv.plugins.gui) ListWidget (class in pydetecdiv.plugins.gui) load() (pydetecdiv.plugins.PluginList method) load_models() (pydetecdiv.plugins.roi_classification.Plugin method) load_plugin() (pydetecdiv.plugins.PluginList method) load_plugins() (pydetecdiv.app.PyDetecDiv static method) load_selected_ROIs() (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationTool method) (pydetecdiv.plugins.roi_classification.gui.classification.ManualAnnotator method) (pydetecdiv.plugins.roi_classification.gui.classification.PredictionViewer method) lr_decay() (pydetecdiv.plugins.roi_classification.Plugin method) lr_exp_decay() (in module pydetecdiv.plugins.roi_classification)

M

MainStatusBar (class in pydetecdiv.app.gui) MainToolBar (class in pydetecdiv.app.gui) MainWindow (class in pydetecdiv.app.gui.Windows) manual_annotation() (pydetecdiv.plugins.roi_classification.Plugin method) ManualAnnotationMenuBar (class in pydetecdiv.plugins.roi_classification.gui.classification) ManualAnnotator (class in pydetecdiv.plugins.roi_classification.gui.classification) Mask (class in pydetecdiv.domain.Mask) mask() (pydetecdiv.domain.Entity.Entity method) masks() (pydetecdiv.domain.Entity.Entity method) mean() (pydetecdiv.domain.Image.Image static method) MessageDialog (class in pydetecdiv.app) MissingNameError module pydetecdiv pydetecdiv.app pydetecdiv.app.gui pydetecdiv.app.gui.ActionsData pydetecdiv.app.gui.ActionsProject pydetecdiv.app.gui.ActionsSettings pydetecdiv.app.gui.core.widgets.TabWidgets pydetecdiv.app.gui.core.widgets.viewers pydetecdiv.app.gui.RawData2FOV pydetecdiv.app.gui.Windows pydetecdiv.domain.dso pydetecdiv.exceptions pydetecdiv.persistence.project pydetecdiv.persistence.repository pydetecdiv.persistence.sqlalchemy.orm.associations pydetecdiv.persistence.sqlalchemy.orm.DataDao pydetecdiv.persistence.sqlalchemy.orm.DatasetDao pydetecdiv.persistence.sqlalchemy.orm.ExperimentDao pydetecdiv.persistence.sqlalchemy.orm.FOVdao pydetecdiv.persistence.sqlalchemy.orm.ImageResourceDao pydetecdiv.persistence.sqlalchemy.orm.main pydetecdiv.persistence.sqlalchemy.orm.ROIdao pydetecdiv.persistence.sqlalchemy.orm.RunDao pydetecdiv.persistence.sqlalchemy.repositories pydetecdiv.plugins pydetecdiv.plugins.gui pydetecdiv.plugins.parameters pydetecdiv.plugins.roi_classification pydetecdiv.plugins.roi_classification.gui.classification pydetecdiv.plugins.roi_classification.gui.ImportAnnotatedROIs pydetecdiv.plugins.roi_classification.gui.prediction pydetecdiv.plugins.roi_classification.gui.training pydetecdiv.settings pydetecdiv.utils pydetecdiv.utils.ImageResource pydetecdiv.utils.path pydetecdiv.utils.Shapes

mouseMoveEvent() (pydetecdiv.app.gui.core.widgets.viewers.Scene method) (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationScene method) mousePressEvent() (pydetecdiv.app.gui.core.widgets.viewers.Scene method) (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationScene method) move_down() (pydetecdiv.app.gui.core.widgets.viewers.Layer method) move_Item() (pydetecdiv.app.gui.core.widgets.viewers.Scene method) move_layer() (pydetecdiv.app.gui.core.widgets.viewers.GraphicsView method) move_up() (pydetecdiv.app.gui.core.widgets.viewers.Layer method) MultiFileImageResource (class in pydetecdiv.domain.MultiFileImageResource)

N

name (pydetecdiv.domain.dso.NamedDSO property) NamedDSO (class in pydetecdiv.domain.dso) NewProject (class in pydetecdiv.app.gui.ActionsProject)

next_roi() (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationTool method) normalised_contour (pydetecdiv.domain.Mask.Mask property) NumParameter (class in pydetecdiv.plugins.parameters)

O

object (pydetecdiv.domain.BoundingBox.BoundingBox property) (pydetecdiv.domain.Mask.Mask property) (pydetecdiv.domain.Point.Point property) on_epoch_end() (pydetecdiv.plugins.roi_classification.DataProvider method) on_toggled() (pydetecdiv.plugins.gui.RadioButton method) open() (pydetecdiv.domain.SingleFileImageResource.SingleFileImageResource method) open_create_project() (pydetecdiv.app.gui.ActionsProject.ProjectDialog method)

open_dialog() (pydetecdiv.app.gui.ActionsData.ComputeDrift method) open_project() (in module pydetecdiv.persistence.project) (pydetecdiv.app.gui.ActionsProject.OpenProject method) OpenProject (class in pydetecdiv.app.gui.ActionsProject) OpenProjectError overlap() (pydetecdiv.app.gui.RawData2FOV.RawData2FOV static method) (pydetecdiv.plugins.roi_classification.gui.ImportAnnotatedROIs.FOV2ROIlinks method)

P

paint() (pydetecdiv.app.gui.core.widgets.viewers.Layer method) Parameter (class in pydetecdiv.plugins.parameters) Parameters (class in pydetecdiv.plugins.parameters) ParametersFormGroupBox (class in pydetecdiv.plugins.gui) parent_plugin (pydetecdiv.plugins.Plugin property) path (pydetecdiv.domain.Project.Project property) path_specification_changed() (pydetecdiv.app.gui.ActionsData.AddPathDialog method) plot_confusion_matrix() (in module pydetecdiv.plugins.roi_classification.gui.training) plot_history() (in module pydetecdiv.plugins.roi_classification.gui.training) plot_roi_classes() (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationChartView method) (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationTool method) Plugin (class in pydetecdiv.plugins) (class in pydetecdiv.plugins.roi_classification) plugin (pydetecdiv.plugins.gui.GroupBox property) PluginList (class in pydetecdiv.plugins) PluginMenu (class in pydetecdiv.app.gui) plugins (pydetecdiv.plugins.PluginList property) Point (class in pydetecdiv.domain.Point) points() (pydetecdiv.app.gui.core.widgets.viewers.Scene method) (pydetecdiv.domain.Entity.Entity method) predict() (pydetecdiv.plugins.roi_classification.Plugin method) PredictionBatch (class in pydetecdiv.plugins.roi_classification) PredictionDialog (class in pydetecdiv.plugins.roi_classification.gui.prediction) PredictionMenuBar (class in pydetecdiv.plugins.roi_classification.gui.classification) PredictionViewer (class in pydetecdiv.plugins.roi_classification.gui.classification) prepare_data_for_classification() (pydetecdiv.plugins.roi_classification.Plugin method) prepare_data_for_training() (pydetecdiv.plugins.roi_classification.Plugin method) previous_roi() (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationTool method) Project (class in pydetecdiv.domain.Project) project_list() (in module pydetecdiv.app) project_name_changed() (pydetecdiv.app.gui.ActionsProject.ProjectDialog method) project_name_validator() (pydetecdiv.app.gui.ActionsProject.ProjectDialog static method) ProjectAction (class in pydetecdiv.app.gui.ActionsProject) ProjectDialog (class in pydetecdiv.app.gui.ActionsProject) PushButton (class in pydetecdiv.plugins.gui) pydetecdiv module PyDetecDiv (class in pydetecdiv.app) pydetecdiv.app module pydetecdiv.app.gui module pydetecdiv.app.gui.ActionsData module pydetecdiv.app.gui.ActionsProject module pydetecdiv.app.gui.ActionsSettings module pydetecdiv.app.gui.core.widgets.TabWidgets module pydetecdiv.app.gui.core.widgets.viewers module pydetecdiv.app.gui.RawData2FOV module pydetecdiv.app.gui.Windows module

pydetecdiv.domain.dso module pydetecdiv.exceptions module pydetecdiv.persistence.project module pydetecdiv.persistence.repository module pydetecdiv.persistence.sqlalchemy.orm.associations module pydetecdiv.persistence.sqlalchemy.orm.DataDao module pydetecdiv.persistence.sqlalchemy.orm.DatasetDao module pydetecdiv.persistence.sqlalchemy.orm.ExperimentDao module pydetecdiv.persistence.sqlalchemy.orm.FOVdao module pydetecdiv.persistence.sqlalchemy.orm.ImageResourceDao module pydetecdiv.persistence.sqlalchemy.orm.main module pydetecdiv.persistence.sqlalchemy.orm.ROIdao module pydetecdiv.persistence.sqlalchemy.orm.RunDao module pydetecdiv.persistence.sqlalchemy.repositories module pydetecdiv.plugins module pydetecdiv.plugins.gui module pydetecdiv.plugins.parameters module pydetecdiv.plugins.roi_classification module pydetecdiv.plugins.roi_classification.gui.classification module pydetecdiv.plugins.roi_classification.gui.ImportAnnotatedROIs module pydetecdiv.plugins.roi_classification.gui.prediction module pydetecdiv.plugins.roi_classification.gui.training module pydetecdiv.settings module pydetecdiv.utils module pydetecdiv.utils.ImageResource module pydetecdiv.utils.path module pydetecdiv.utils.Shapes module pydetecdiv_project() (in module pydetecdiv.app) PyDetecDivThread (class in pydetecdiv.app)

Q

Quit (class in pydetecdiv.app.gui)

R

RadioButton (class in pydetecdiv.plugins.gui) raw_dataset (pydetecdiv.domain.Experiment.Experiment property) (pydetecdiv.domain.Project.Project property) RawData2FOV (class in pydetecdiv.app.gui.RawData2FOV) record (pydetecdiv.persistence.sqlalchemy.orm.associations.ROIdata property) (pydetecdiv.persistence.sqlalchemy.orm.DataDao.DataDao property) (pydetecdiv.persistence.sqlalchemy.orm.DatasetDao.DatasetDao property) (pydetecdiv.persistence.sqlalchemy.orm.ExperimentDao.ExperimentDao property) (pydetecdiv.persistence.sqlalchemy.orm.FOVdao.FOVdao property) (pydetecdiv.persistence.sqlalchemy.orm.ImageResourceDao.ImageResourceDao property) (pydetecdiv.persistence.sqlalchemy.orm.main.DAO property) (pydetecdiv.persistence.sqlalchemy.orm.ROIdao.ROIdao property) (pydetecdiv.persistence.sqlalchemy.orm.RunDao.RunDao property) record() (pydetecdiv.domain.BoundingBox.BoundingBox method) (pydetecdiv.domain.Data.Data method) (pydetecdiv.domain.Dataset.Dataset method) (pydetecdiv.domain.dso.DomainSpecificObject method) (pydetecdiv.domain.Entity.Entity method) (pydetecdiv.domain.Experiment.Experiment method) (pydetecdiv.domain.FOV.FOV method) (pydetecdiv.domain.ImageResource.ImageResource method) (pydetecdiv.domain.Mask.Mask method) (pydetecdiv.domain.Point.Point method) (pydetecdiv.domain.ROI.ROI method) (pydetecdiv.domain.Run.Run method) refresh() (pydetecdiv.domain.SingleFileImageResource.SingleFileImageResource method) regions() (pydetecdiv.app.gui.core.widgets.viewers.Scene method) register() (pydetecdiv.plugins.Plugin method) (pydetecdiv.plugins.roi_classification.Plugin method) register_all() (pydetecdiv.plugins.PluginList method) remove_items() (pydetecdiv.app.gui.ActionsData.FileListView method) (pydetecdiv.plugins.gui.ListView method)

remove_keys_from_dict() (in module pydetecdiv.utils) reset() (pydetecdiv.app.gui.ActionsSettings.SettingsDialog method) (pydetecdiv.app.gui.RawData2FOV.RawData2FOV method) (pydetecdiv.domain.Image.Image method) (pydetecdiv.plugins.parameters.NumParameter method) (pydetecdiv.plugins.parameters.Parameter method) (pydetecdiv.plugins.parameters.Parameters method) (pydetecdiv.plugins.roi_classification.gui.ImportAnnotatedROIs.FOV2ROIlinks method) resize() (pydetecdiv.domain.Image.Image method) Results (class in pydetecdiv.plugins.roi_classification) resume_manual_annotation() (pydetecdiv.plugins.roi_classification.Plugin method) rgb_to_gray() (pydetecdiv.domain.Image.Image method) ROI (class in pydetecdiv.domain.ROI) roi (pydetecdiv.domain.Entity.Entity property) roi_class() (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationTool method) roi_list (pydetecdiv.domain.FOV.FOV property) roi_list() (pydetecdiv.persistence.sqlalchemy.orm.DataDao.DataDao method) (pydetecdiv.persistence.sqlalchemy.orm.FOVdao.FOVdao method) roi_to_data() (pydetecdiv.persistence.sqlalchemy.orm.associations.ROIdata static method) ROIdao (class in pydetecdiv.persistence.sqlalchemy.orm.ROIdao) ROIdata (class in pydetecdiv.persistence.sqlalchemy.orm.associations) rollback() (pydetecdiv.persistence.repository.ShallowDb method) (pydetecdiv.persistence.sqlalchemy.repositories.ShallowSQLite3 method) round_to_even() (in module pydetecdiv.utils) Run (class in pydetecdiv.domain.Run) run() (pydetecdiv.app.PyDetecDivThread method) run_fine_tuning() (pydetecdiv.plugins.roi_classification.Plugin method) run_import_classifier() (pydetecdiv.plugins.roi_classification.Plugin method) run_prediction() (pydetecdiv.plugins.roi_classification.Plugin method) run_training() (pydetecdiv.plugins.roi_classification.Plugin method) RunDao (class in pydetecdiv.persistence.sqlalchemy.orm.RunDao)

S

save() (pydetecdiv.domain.Project.Project method) (pydetecdiv.plugins.roi_classification.Results method) (pydetecdiv.plugins.roi_classification.TrainingData method) save_annotation() (pydetecdiv.plugins.roi_classification.Plugin method) save_annotations() (pydetecdiv.plugins.roi_classification.Plugin method) save_new_classes() (pydetecdiv.plugins.roi_classification.gui.classification.DefineClassesDialog method) save_object() (pydetecdiv.persistence.repository.ShallowDb method) (pydetecdiv.persistence.sqlalchemy.repositories.ShallowSQLite3 method) save_record() (pydetecdiv.domain.Project.Project method) save_run() (pydetecdiv.plugins.Plugin method) (pydetecdiv.plugins.roi_classification.gui.classification.ManualAnnotator method) (pydetecdiv.plugins.roi_classification.gui.ImportAnnotatedROIs.FOV2ROIlinks method) save_training_datasets() (pydetecdiv.plugins.roi_classification.Plugin method) save_training_run() (pydetecdiv.plugins.roi_classification.Plugin method) Scene (class in pydetecdiv.app.gui.core.widgets.viewers) select_appdata_path() (pydetecdiv.app.gui.ActionsSettings.SettingsDialog method) select_class_names() (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationTool method) select_Item() (pydetecdiv.app.gui.core.widgets.viewers.Scene method) select_prediction_run() (pydetecdiv.plugins.roi_classification.gui.classification.PredictionViewer method) select_saved_parameters() (pydetecdiv.plugins.roi_classification.Plugin method) select_tool() (pydetecdiv.app.gui.Windows.Cursor method) (pydetecdiv.app.gui.Windows.DrawPoint method) (pydetecdiv.app.gui.Windows.DrawRect method) (pydetecdiv.app.gui.Windows.DuplicateItem method) select_toolbox_path() (pydetecdiv.app.gui.ActionsSettings.SettingsDialog method) select_workspace() (pydetecdiv.app.gui.ActionsSettings.SettingsDialog method) selected (pydetecdiv.plugins.gui.ComboBox property) selection() (pydetecdiv.plugins.gui.ListView method) session (pydetecdiv.persistence.sqlalchemy.repositories.ShallowSQLite3 property) set_apply_drift() (pydetecdiv.app.PyDetecDiv static method) set_choice() (pydetecdiv.app.gui.Windows.ImageResourceChooser method) set_class_names_choice() (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationMenuBar method) (pydetecdiv.plugins.roi_classification.gui.classification.ManualAnnotationMenuBar method) (pydetecdiv.plugins.roi_classification.gui.classification.PredictionMenuBar method) set_connections() (in module pydetecdiv.plugins.gui) set_enabled_actions() (pydetecdiv.plugins.roi_classification.Plugin method) set_function() (pydetecdiv.app.PyDetecDivThread method) set_graphics_item() (pydetecdiv.domain.Mask.Mask method) set_ignore_close_event() (pydetecdiv.app.AbstractWaitDialog method) set_image_shape_from_file() (pydetecdiv.domain.ImageResource.ImageResource method) set_Item_height() (pydetecdiv.app.gui.core.widgets.viewers.Scene method) set_item_height() (pydetecdiv.app.gui.Windows.DrawingToolsPalette method) set_Item_width() (pydetecdiv.app.gui.core.widgets.viewers.Scene method) set_item_width() (pydetecdiv.app.gui.Windows.DrawingToolsPalette method) set_items() (pydetecdiv.plugins.parameters.ChoiceParameter method) set_main_window() (pydetecdiv.app.PyDetecDiv static method) set_maximum() (pydetecdiv.plugins.parameters.NumParameter method) set_minimum() (pydetecdiv.plugins.parameters.NumParameter method) set_range() (pydetecdiv.plugins.parameters.NumParameter method) set_roi_list() (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationTool method) set_run_choice() (pydetecdiv.plugins.roi_classification.gui.classification.PredictionMenuBar method) set_run_list() (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationTool method) set_title() (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationTool method) set_top_tab() (pydetecdiv.app.gui.core.widgets.TabWidgets.TabbedWindow method) set_value() (pydetecdiv.plugins.parameters.ChoiceParameter method) (pydetecdiv.plugins.parameters.Parameter method) setBrush() (pydetecdiv.domain.Mask.Mask method) setCurrentIndex() (pydetecdiv.plugins.gui.ComboBox method) (pydetecdiv.plugins.gui.ListWidget method) setEditable() (pydetecdiv.plugins.gui.LineEdit method) setItemsDict() (pydetecdiv.plugins.gui.ComboBox method) setModel() (pydetecdiv.plugins.gui.DoubleSpinBox method) (pydetecdiv.plugins.gui.Label method) (pydetecdiv.plugins.gui.LineEdit method) (pydetecdiv.plugins.gui.RadioButton method) (pydetecdiv.plugins.gui.SpinBox method)

setRowVisible() (pydetecdiv.plugins.gui.ParametersFormGroupBox method) setText() (pydetecdiv.plugins.gui.ComboBox method) Settings (class in pydetecdiv.app.gui.ActionsSettings) SettingsDialog (class in pydetecdiv.app.gui.ActionsSettings) setup() (pydetecdiv.app.gui.core.widgets.viewers.GraphicsView method) (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationMenuBar method) (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationTool method) (pydetecdiv.plugins.roi_classification.gui.classification.ManualAnnotationMenuBar method) (pydetecdiv.plugins.roi_classification.gui.classification.ManualAnnotator method) (pydetecdiv.plugins.roi_classification.gui.classification.PredictionMenuBar method) (pydetecdiv.plugins.roi_classification.gui.classification.PredictionViewer method) setup_class_names() (pydetecdiv.plugins.roi_classification.gui.classification.DefineClassesDialog method) setValue() (pydetecdiv.plugins.gui.ComboBox method) (pydetecdiv.plugins.gui.ListView method) ShallowDb (class in pydetecdiv.persistence.repository) ShallowSQLite3 (class in pydetecdiv.persistence.sqlalchemy.repositories) Shape (class in pydetecdiv.utils.ImageResource) shape (pydetecdiv.domain.Image.Image property) (pydetecdiv.domain.ImageResource.ImageResource property) (pydetecdiv.domain.ImageResourceData.ImageResourceData property) (pydetecdiv.domain.MultiFileImageResource.MultiFileImageResource property) (pydetecdiv.domain.SingleFileImageResource.SingleFileImageResource property) show() (pydetecdiv.domain.Image.Image method) show_chosen_colours() (pydetecdiv.app.gui.RawData2FOV.RawData2FOV method) (pydetecdiv.plugins.roi_classification.gui.ImportAnnotatedROIs.FOV2ROIlinks method) show_info() (pydetecdiv.app.gui.Help method) show_memory_usage() (pydetecdiv.app.gui.MainStatusBar method) show_plot() (pydetecdiv.app.gui.core.widgets.TabWidgets.TabbedWindow method) show_progress() (pydetecdiv.app.WaitDialog method) show_results() (pydetecdiv.plugins.roi_classification.Plugin method) sigmoid_correction() (pydetecdiv.domain.Image.Image method) SingleFileImageResource (class in pydetecdiv.domain.SingleFileImageResource) singleton() (in module pydetecdiv.utils) size (pydetecdiv.domain.dso.BoxedDSO property) (pydetecdiv.domain.FOV.FOV property) (pydetecdiv.utils.Shapes.Box property) sizeC (pydetecdiv.domain.ImageResource.ImageResource property) (pydetecdiv.domain.ImageResourceData.ImageResourceData property) (pydetecdiv.domain.MultiFileImageResource.MultiFileImageResource property) (pydetecdiv.domain.SingleFileImageResource.SingleFileImageResource property) sizeT (pydetecdiv.domain.ImageResource.ImageResource property) (pydetecdiv.domain.ImageResourceData.ImageResourceData property) (pydetecdiv.domain.MultiFileImageResource.MultiFileImageResource property) (pydetecdiv.domain.SingleFileImageResource.SingleFileImageResource property) sizeX (pydetecdiv.domain.ImageResource.ImageResource property) (pydetecdiv.domain.ImageResourceData.ImageResourceData property) (pydetecdiv.domain.MultiFileImageResource.MultiFileImageResource property) (pydetecdiv.domain.SingleFileImageResource.SingleFileImageResource property) sizeY (pydetecdiv.domain.ImageResource.ImageResource property) (pydetecdiv.domain.ImageResourceData.ImageResourceData property) (pydetecdiv.domain.MultiFileImageResource.MultiFileImageResource property) (pydetecdiv.domain.SingleFileImageResource.SingleFileImageResource property) sizeZ (pydetecdiv.domain.ImageResource.ImageResource property) (pydetecdiv.domain.ImageResourceData.ImageResourceData property) (pydetecdiv.domain.MultiFileImageResource.MultiFileImageResource property) (pydetecdiv.domain.SingleFileImageResource.SingleFileImageResource property) source_list_is_not_empty() (pydetecdiv.app.gui.ActionsData.ImportDataDialog method) SpinBox (class in pydetecdiv.plugins.gui) StdoutWaitDialog (class in pydetecdiv.app) stem() (in module pydetecdiv.utils.path) stop_redirection() (pydetecdiv.app.StdoutWaitDialog method) StreamRedirector (class in pydetecdiv.app) stretch_contrast() (pydetecdiv.domain.Image.Image method) StringParameter (class in pydetecdiv.plugins.parameters) StyleSheets (class in pydetecdiv.plugins.gui) sub_directory_name_validator() (pydetecdiv.app.gui.ActionsData.ImportDataDialog static method) subwindow_activation() (pydetecdiv.app.gui.Windows.MainWindow method)

T

TabbedWindow (class in pydetecdiv.app.gui.core.widgets.TabWidgets) TableView (class in pydetecdiv.plugins.gui) tdim (pydetecdiv.domain.ImageResource.ImageResource property) test() (pydetecdiv.domain.Run.Run method) text() (pydetecdiv.plugins.gui.ComboBox method) to_dict() (pydetecdiv.plugins.parameters.Parameters method) to_shape() (pydetecdiv.domain.Mask.Mask method) toggle() (pydetecdiv.app.gui.ActionsData.FileListView method) (pydetecdiv.plugins.gui.AdvancedButton method) (pydetecdiv.plugins.gui.ListView method)

toggle_buttons() (pydetecdiv.app.gui.ActionsSettings.SettingsDialog method) toggleVisibility() (pydetecdiv.app.gui.core.widgets.viewers.Layer method) top_left (pydetecdiv.domain.dso.BoxedDSO property) (pydetecdiv.domain.FOV.FOV property) (pydetecdiv.utils.Shapes.Box property) train_model() (pydetecdiv.plugins.roi_classification.Plugin method) TrainingData (class in pydetecdiv.plugins.roi_classification) TrainingDialog (class in pydetecdiv.plugins.roi_classification.gui.training) translate_record() (pydetecdiv.persistence.sqlalchemy.orm.main.DAO static method)

U

UnknownRepositoryTypeError unlink() (pydetecdiv.persistence.repository.ShallowDb method) (pydetecdiv.persistence.sqlalchemy.repositories.ShallowSQLite3 method) unlink_objects() (pydetecdiv.domain.Project.Project method) unselect() (pydetecdiv.app.gui.ActionsData.FileListView method) (pydetecdiv.plugins.gui.ListView method) unselect_items() (pydetecdiv.app.gui.core.widgets.viewers.Scene method) unset_tools() (pydetecdiv.app.gui.Windows.DrawingToolsPalette method) update() (pydetecdiv.persistence.sqlalchemy.orm.main.DAO method) (pydetecdiv.plugins.parameters.Parameter method) (pydetecdiv.plugins.parameters.Parameters method) update_channels() (pydetecdiv.plugins.roi_classification.Plugin method)

update_class_names() (pydetecdiv.plugins.roi_classification.Plugin method) update_datasets() (pydetecdiv.plugins.roi_classification.gui.training.TrainingDialog method) update_fov_list() (pydetecdiv.app.gui.ActionsData.ComputeDriftDialog method) (pydetecdiv.plugins.roi_classification.Plugin method) update_model_weights() (pydetecdiv.plugins.roi_classification.Plugin method) update_parameters() (pydetecdiv.plugins.Plugin method) (pydetecdiv.plugins.roi_classification.Plugin method) update_roi_classes_plot() (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationTool method) update_ROI_selection() (pydetecdiv.plugins.roi_classification.gui.classification.AnnotationTool method) url (pydetecdiv.domain.Data.Data property) (pydetecdiv.domain.Dataset.Dataset property) uuid (pydetecdiv.domain.Project.Project property)

V

validate() (pydetecdiv.domain.dso.DomainSpecificObject method) (pydetecdiv.plugins.parameters.FloatParameter method) (pydetecdiv.plugins.parameters.IntParameter method) (pydetecdiv.plugins.parameters.NumParameter method) (pydetecdiv.plugins.parameters.Parameter method) value (pydetecdiv.plugins.parameters.ChoiceParameter property) (pydetecdiv.plugins.parameters.Parameter property)

value() (pydetecdiv.plugins.gui.ComboBox method) values (pydetecdiv.plugins.parameters.ChoiceParameter property) values() (pydetecdiv.plugins.parameters.Parameters method) view() (pydetecdiv.app.gui.core.widgets.viewers.Scene method) viewer (pydetecdiv.app.gui.core.widgets.viewers.Scene property)

W

wait_for() (pydetecdiv.app.AbstractWaitDialog method) WaitDialog (class in pydetecdiv.app) wheelEvent() (pydetecdiv.app.gui.core.widgets.viewers.Scene method)

width (pydetecdiv.domain.BoundingBox.BoundingBox property) (pydetecdiv.utils.Shapes.Box property) write() (pydetecdiv.app.StreamRedirector method)

X

x (pydetecdiv.domain.BoundingBox.BoundingBox property) (pydetecdiv.domain.Point.Point property)

xdim (pydetecdiv.domain.ImageResource.ImageResource property)

Y

y (pydetecdiv.domain.BoundingBox.BoundingBox property) (pydetecdiv.domain.Point.Point property)

ydim (pydetecdiv.domain.ImageResource.ImageResource property)

Z

zdim (pydetecdiv.domain.ImageResource.ImageResource property) zIndex (pydetecdiv.app.gui.core.widgets.viewers.BackgroundLayer property) (pydetecdiv.app.gui.core.widgets.viewers.Layer property)

zoom_fit() (pydetecdiv.app.gui.core.widgets.viewers.GraphicsView method) zoom_set_value() (pydetecdiv.app.gui.core.widgets.viewers.GraphicsView method)